Publications
Bajaj, S., Tolleson, S., Zarfeshani, A., Hav, M., Pawlowski, S. C., Lyons, D. E., Padmanabhan, R., Tarolli, J. G., Nagy, M. L. "Automated Single Cell Phenotyping of Time-of-Flight Secondary Ion Mass Spectrometry Tissue Images" Journal of the American Society for Mass Spectrometry, xxxx (xxx) (2024), xxx-xxx. doi: 10.1021/jasms.4c00328.
Tian, H., Rajbhandari, P., Tarolli, J. G., Decker, A. M., Neelakantan, T. V., Angerer, T., Zandkarimi, F., Remotti, H., Frache, G., Winograd, N., Stockwell, B. R. "Multimodal mass spectrometry imaging identifies cell-type-specific metabolic and lipidomic variation in the mammalian liver" Developmental Cell, 59 (7) (2024), 869-881. doi: 10.1016/j.devcel.2024.01.025.
Ptacek, J., Locke, D., Finck, R., Cvijic, M., Li, Z., Tarolli, J. G., Aksoy, M., Sigal, Y., Zhang, Y., Newgren, M., Finn, J. "Multiplexed ion beam imaging (MIBI) for characterization of the tumor microenvironment across tumor types" Laboratory Investigations, 100 (2020), 1111-1123. doi: 10.1038/s41374-020-0417-4.
Willingham, D., Naes, B. E., Tarolli, J. G., Schemer-Kohrn, A., Rhodes, M., Dahl, M., Guzman, A., Burkes, D. E. "Image fusion of Secondary Ion Mass Spectrometry and energy-dispersive X-Ray spectroscopy data for the characterization of uranium-molybdenum fuel foils" Journal of Nuclear Materials, 498 (2018), 348-354. doi: 10.1016/j.jnucmat.2017.10.028.
Tarolli, J. G., Naes, B. E., Butler, L., Foster, K., Gumbs, C. M., Howard, A. L., Willingham, D. "Fully convolutional neural network for removing background in noisy images of uranium bearing particles" Analyst, 142 (2017), 1499-1511. doi: 10.1039/c7an00175d.
Tarolli, J. G., Naes, B. E., Garcia, B. J., Fischer, A. E., Willingham, D. "High resolution isotopic analysis of U-bearing particles via fusion of SIMS and EDS images" Journal of Analytical Atomic Spectrometry, 31 (2016), 1472-1479. doi: 10.1039/C6JA00149A.
Tarolli, J. G., Bloom, A., Winograd, N. "Multimodal Image Fusion with SIMS: Preprocessing with Image Registration" Biointerphases, 11 (2016), 02A311-1-02A311-10. doi: 10.1116/1.4939892.
Shen, K., Tarolli, J. G., Winograd, N. "Cluster-SIMS Imaging of Interfacial Reactions of TiO2 Microspheres Embedded in Ionic Liquids" Rapid Communications in Mass Spectrometry, 30 (2015), 379-385. doi: 10.1002/rcm.7447.
Tarolli, J. G., Tian, H., Winograd, N. "Application of pan-sharpening to SIMS Imaging" Surface and Interface Analysis, 46 (2014), 217-220. doi: 10.1002/sia.5540.
Tarolli, J. G., Jackson, L. M., Winograd, N. "Improving Secondary Ion Mass Spectrometry Image Quality Based on Image Fusion" Journal of The American Society of Mass Spectrometry, 25 (2014), 2154-2162. doi: 10.1007/s13361-014-0927-7.
Book Chapters
Munch, Y., Abel, E., Hav, M., Padmanabhan, R., Pawlowski, S., Gubbens, A., Bendall, S., Kimmey, S. C., Tarolli, J. G.. "Single-cell spatial phenotype mapping of tissue microenvironments with multiplexed ion beam imaging (MIBI)", Revealing Uncharted Biology with Single Cell Multiplex Proteomic Technologies (1st Edition) 59-91. doi: 10.1016/B978-0-12-822209-6.00007-2.
Presentations
Tarolli, J. G., Nagy, M., Bajaj S., Padmanabhan, R. "Automated Single Cell Phenotyping for Multiplexed Time-of-Flight Secondary Ion Mass Spectrometry Tissue Imaging" 101st IUVSTA Workshop, Maresais, Brazil, May, 2024. (Invited)
Tarolli, J. G., Finck, R., Aksoy, M., Stumbo, D. "Multiplexed Ion Beam Imaging: Cell and Tissue Imaging using Secondary Ion Mass Spectrometry" AVS 65th International Symposium, Long Beach, CA, October, 2018.
Tarolli, J. G., Naes, B. E., Willingham, D. "Combining a Convolutional Neural Network and Watershed Segmentation for Identifying U-Bearing Particles in Secondary Ion Mass Spectrometry Images" Microscopy & Microanalysis 2017, St. Louis, MO, August, 2017.
Tarolli, J. G., Naes, B. E., Garcia, B. J., Fischer, A. E., Willingham, D. "Image Fusion for Improving the Visualization of Elemental and Isotopic Distributions in SIMS" AVS 63rd International Symposium, Nashville, TN, November, 2016.
Tarolli, J. G., Tian, H., Bloom, A., Winograd, N. "Exploring New Sources of Higher Resolution Data for Image Fusion" 20th International Conference on Secondary Ion Mass Spectrometry, Seattle, WA, September, 2015.
Tarolli, J. G., Tian, H., Winograd, N. "Utilizing Complementary Data to Improve Image Resolution using Image Fusion" 19th International Conference on Secondary Ion Mass Spectrometry, Jeju, Korea, October, 2013.
Tarolli, J. G., Jackson, L. M., Winograd, N. "Enhancing SIMS Image Resolution with SEM Data Using Image Fusion" 25th Annual Workshop on SIMS, Annapolis, MD, May, 2013.
Poster Presentations
Tarolli, J. G., Finck, R., Aksoy, M., Sigal, Y., Newgren, N., Finn, J., Ptacek, J. "Segmentation and Classification of Single Cells using Multiplexed Ion Beam Imaging" 34th Annual Society for Immunotherapy of Cancer, National Harbor, MD, November, 2019.
Tarolli, J. G., Ptacek, J., Finck, R., Finn, J., Schemm, E. R., Shepperson, B., Tighe, R. "Multiplexed Ion Beam Imaging for Single Cell Phenotyping" 35th ASMS Asilomar Conference: Mass Spectrometry Imaging, Pacific Grove, CA, October, 2019.
Tarolli, J. G., Palma, J. P., Johnson, R. W., Finck, R., Aksoy, M., Finn, J., Ptacek, J. "Single Cell Classification of Cancerous Tissue Images Using Multiplexed Ion Beam Imaging" 67th ASMS Conference on Mass Spectrometry and Allied Topics, Atlanda, GA, June, 2019.
Tarolli, J. G., Naes, B. E., Willingham, D. "Uranium Bearing Particle Identification using a Fully Convolutional Neural Network and Watershed Segmentation" Microscopy & Microanalysis 2017 Pre-Meeting Congress for Students and Early-Career Professionals, St. Louis, MO, August, 2017.
Tarolli, J. G., Naes, B. E., Willingham, D. "Uranium Bearing Particle Identification using a Fully Convolutional Neural Network and Watershed Segmentation" 65th ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis, IN, June, 2017.
Tarolli, J. G., Naes, B. E., Willingham, D. "Dynamic SIMS Image Quality Improved using Image Fusion" Microscopy & Microanalysis 2016, Columbus, OH, July, 2016.
Tarolli, J. G., Tian, H., Jackson, L. M., Winograd, N. "Expanding the Applications of Image Fusion" 25th Annual Workshop on SIMS, National Harbor, MD, May, 2014.
Conference Papers
Tarolli, J. G., Naes, B. E., Willingham, D. "Combining a Convolutional Neural Network and Watershed Segmentation for Identifying U-Bearing Particles in Secondary Ion Mass Spectrometry Images", (2017). doi: 10.1017/S1431927617001271.
Tarolli, J. G., Naes, B. E., Willingham, D. "Correlative Isotopic Analysis by Image Fusion of Electron Microscopy and Secondary Ion Mass Spectrometry Data", (2016). doi: 10.1017/S1431927616001999.